Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015789489.1_cds_XP_016496559.1_1010
CDS Infomation

[gene=LOC107815488] [db_xref=GeneID:107815488] [protein=low-temperature-induced cysteine proteinase-like] [protein_id=XP_016496559.1] [location=complement(join(22204..22347,22989..23486,23577..23714,23813..24048,25309..25810))] [gbkey=CDS]
Sequence

ATGGGAAGCATACAGATTCCCTATCGACACTTCCTTCTTCTCCCACTTTTCTTGATCTTA
GCTGCGTTATATTCTCAAGTTTCTGCTTTTACTACTGATTTTCCAATACTAGACAGACCA
ACTGAGTTTCTTTCAGAAGAAAGAGTATTCCAACTTTTCCAAGAATGGAAACAGAGGCAT
GGGAAAGTTTACAAGAATGAGAAAGAGGAAGAAATGAGGTTGGACAAGTTTAAAAGGAAT
GTGAAGTATATAGTGGAAAAGAATTCAAAGAAGAAGTCAGACTCAGACCATTTTGTTGGT
CTGACCAAGTTTGCTGATATGAGCAATGAGGAATTTAGGCAAGTTCATACTTCAAACATT
AAGATACCCTTTAACAAGAGAAAGACTATTCAAATGAGGAGTGTGGAGAGAAAGCCTTCA
ACAGCTTCTTGTGATGTTCCTCCATCAAAGGATTGGAGAAAACATGGGGCTGTCACTGAG
GTCAAGAATCAAGATCAATGTGGAGCATGCTGGGCATTCTCGGCGTGCGGAGCAATGGAG
GGAATAAATGCAATAGCCACTGGTGAACTTATTAGCCTTTCTGAACAAGAACTTATCAAT
TGTGATAATTCATACAATACTGGCTGTGATGGTGGACTTATGGACCCTGCTTTTGAATGG
GTGATGAACAATAGTGGCATTAATTCAGAAGCTGATTATCCATATACTGCTTCTCAAGGC
CGTTGCAATTACGATAAGGTGAACCATAAGGTTGTAATAATTGATGGATACCAAGATGTT
CCAGAGGACGAGAATGCCCTTCTTTGTGCTGTTGGGCAACAACCTGTTAGTGTAGGCATC
GACGGAAGCAGCCTTGATTTTCAACTATATAGAGGGGGAATCTACGATGGAGAATGCTCT
AGCAATCCAGATGACTTATCCCATGCAGTAGTAATAGTAGGATATGGTTCTGAAGGAGAT
GATGATTATTGGATTATCAAGAATTCATGGGGTACATCGTGGGGAATGGAAGGGTATGCA
TATATAAGAAGGAACACTTATTTGCCATATGGGGTTTGTGCCATTAATTCGTTGGCTTCA
TATCCAACGAAAGAAGCATCTTCAGCGCCATCTCCTTATCCGTCTCCAGCCGTTCCACCA
CCTCCTCCGCCATCCCCTCCGCCCCCTCCACCGCCTTCTCCAAAACCAAGTGAATGTGGA
GAATTTTATTACTGTCCAGAAGATCAAACATGCTGCTGTGAGTTGTACTTCTTTGGCATA
TGCTTCATTCAGGGATGCTGTCCTTATGAGAATGGTGTTTGCTGTCATGGATCAGAATTT
TGTTGCCCAGCTGACTATCCTATTTGTGATGTTTATGAAGGCCTCTGCCTCAAGGATTAC
CGCGACAATATTGGAGTGGCAGCAAGGAAGAGAAGAATGGCCAAACACAAGTTACCATGG
AGAGCTAACACTGAAGCAACAGAGGAGAGGGACCAAACTCTGAAATGGAAGAGAAATCAT
GTTGCTGCAATGCGTTGA

Peptide Sequence

PEP ID

XP_016496559.1
PEP Infomation

PREDICTED: low-temperature-induced cysteine proteinase-like [Nicotiana tabacum]
Sequence

MGSIQIPYRHFLLLPLFLILAALYSQVSAFTTDFPILDRPTEFLSEERVFQLFQEWKQRH
GKVYKNEKEEEMRLDKFKRNVKYIVEKNSKKKSDSDHFVGLTKFADMSNEEFRQVHTSNI
KIPFNKRKTIQMRSVERKPSTASCDVPPSKDWRKHGAVTEVKNQDQCGACWAFSACGAME
GINAIATGELISLSEQELINCDNSYNTGCDGGLMDPAFEWVMNNSGINSEADYPYTASQG
RCNYDKVNHKVVIIDGYQDVPEDENALLCAVGQQPVSVGIDGSSLDFQLYRGGIYDGECS
SNPDDLSHAVVIVGYGSEGDDDYWIIKNSWGTSWGMEGYAYIRRNTYLPYGVCAINSLAS
YPTKEASSAPSPYPSPAVPPPPPPSPPPPPPPSPKPSECGEFYYCPEDQTCCCELYFFGI
CFIQGCCPYENGVCCHGSEFCCPADYPICDVYEGLCLKDYRDNIGVAARKRRMAKHKLPW
RANTEATEERDQTLKWKRNHVAAMR

Transcript Sequence

Gene sequence data has not been registered.